PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16497A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 323aa    MW: 35036.4 Da    PI: 6.6693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16497AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181465147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                               rg+WT+eEde+lv ++k++G g+W+t ++         gRt++++k++w+++
  Oropetium_20150105_16497A 14 RGPWTPEEDEKLVAYIKKHGQGNWRTLPKNAAiaarlPGRTDNEIKNYWNTH 65
                               89********************9987666555555555************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-24573IPR009057Homeodomain-like
PROSITE profilePS5129424.092970IPR017930Myb domain
SuperFamilySSF466896.75E-17975IPR009057Homeodomain-like
SMARTSM007179.4E-161368IPR001005SANT/Myb domain
PfamPF002491.2E-151465IPR001005SANT/Myb domain
CDDcd001676.91E-171666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPCCDKS GLKRGPWTPE EDEKLVAYIK KHGQGNWRTL PKNAAIAARL PGRTDNEIKN  60
YWNTHIRKRL LRMGLDPVTH APRLDLLDLS SLIKPHASAV AAAYYPTQGD LDTLRALEPL  120
ARYPDLLRLA SALLSGTPAL ATDHHQHQQL LPWLLQAQMT QQAAASAMAQ QQVAPPATTQ  180
QAADQFMQQQ QQQAAACQMP GLVHASLTMQ QQQQQLQTTA CHSVPPPPTS YIDDDGSLLD  240
MPALMQMVQQ QHSDASNLQQ QWSSTVTSSN NNCNLGGSGV STPSSSPVVA RLSSNSTTTA  300
NDDAGALFNM QLSDLLDVSD YM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126157e-78CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670489.11e-105PREDICTED: snRNA-activating protein complex subunit 4
TrEMBLA0A096Q9W01e-106A0A096Q9W0_MAIZE; Uncharacterized protein
TrEMBLM0XRT91e-106M0XRT9_HORVD; Uncharacterized protein
STRINGMLOC_62436.11e-106(Hordeum vulgare)
STRINGGRMZM2G031323_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-49MYB-like 102